NTFS permission issue

That sounds exactly like my hard drive that failed without SMART errors. It really seems like your hard drive is failing. Just because it works better in Windows 8 or other systems, it does not mean that the HDD is OK. I experienced the exact same issue and it got worse and worse over time. Now my HDD only can read/write 1kb/s instead of several MB/s. So it technically “works”, but it is clearly failing.
Once I bought a replacement drive, cloned the contens from the old drive to the new one, everything was perfect again.

Do you have a replacement drive? If yes, try out if it is similarly slow. If it is not, your old HDD is most likely failing.